I am currently writing a library that uses the blast's Like The problem is, I'm using DB source file I want to use so that I can remove some scenes after processing. The only way I know how to do this is to use But, it only works when < Code> Title Is there any other way to remove the Fastest source file from the explosion database name? Do not see me in the list of found a solution based on a biostar question, and a blog post. Explosion required + 2.2.28 If your fast does not exactly nick the NCBI Use the -outfmt 10 option , Which gives you a CSV instead of a beautiful human-readable format.
tblastn-db dmel_a -query somequery.faa -outfmt 10
-outfmt 10 to remove and run the blast twice. Then I parse human readable output for that line:
Database: source.fas
makeblastdb is not specified in the database to create
stitle of
outfmt 10 anyway seems a fast header line. I can not simply search the database name and then a
.fna, .fas, .faa because you can name the database differently from the source file.
outfmt options or am I blind today?
-psse_sconds flag when you create an explosion database, then with blastdbcmd, You can remove a limit of the sequence
blastdbcmd -db t / blastTest / dmel -range 1-10- enter some some_seq_id
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